Validate Assets Config
Arguments
- assets_config
List containing asset configuration settings as part of the `napistu_config`. If this is an empty list, the `test_pathway` bundled with `napistu-r` will be used.
- assets_dir
relative to this directory.
- sbml_dfs
Path to a pickled `SBML_dfs` object generated by the Napistu Python package. `SBML_df`s are self-contained relational representations of a pathway.
- napistu_graph
Path to a pickled `NapistuGraph` object generated by the Napistu Python package. `NapistuGraph`s are a subclass of `igraph.Graph`.
- species_identifiers
Path to a .tsv containing the systematic identifiers for all of the molecular species in the `SBML_dfs`.
- precomputed_distances
Optional, path to a .parquet file containing pairwise distances between molecular species. Defining this can speed up the calculation of shortest paths and neighborhoods.
- minimal_validation
If TRUE then only the structure of `assets_config` will be validated. If FALSE then the definition and existence of required assets will be confirmed.