Skip to contents

Unnest the neighborhoods' vertices

Usage

create_neighborhood_summary_table(neighborhood_table)

Arguments

neighborhood_table

a tibble produced by create_neighborhood_table containing one row per neighborhood with nested lists as attributes:

sc_name

A human readible name for the focal vertex

s_id

The internal unique species id of the focal vertex

c_id

The internal unique compartment id of the focal vertex

sc_id

The internal unique compartmentalized species id of the focal vertex

sc_Source

The Source object for the focal vertex

vertices

The vertices in the focal vertex's neighborhood

edges

The edges in the focal vertex's neighborhood

edge_source

The source pathways of the reaction vertices

Value

an unnested table of vertices across all neighborhoods